Category: S.601 - dejavu
DEJAVU can be used for three purposes:
- finding proteins in the PDB which contain a particular
motif that also occurs on your protein
- finding proteins in the PDB which display structural
similarity to your protein
- the new, exiting (and as yet undocumented) option to
use strands and helices from your SKELETON (i.e.,
without you even knowing their direction or connectivity !)
to find similar proteins in the PDB. This option requires
some new options in O and will be documented when these
options are in place.
DEJAVU comes complete with SSE databases, C-shell scripts
and various pre- and post-processing programs. LSQMAN, our
least-squares superpositioning program, is also included.