Q.805 - Which programs are in the X-UTIL package ?

• avepdb average two or more PDB files of aligned proteins AVEPDB average two or more PDB files of aligned proteins
• rmspdb calculate RMS distances between two molecules RMSPDB calculate RMS distances between two molecules
• odbm O datablock maker and more (obsolete; use ODBMAN) ODBM O datablock maker and more (obsolete; use ODBMAN)
• cello various cell stuff; exchange NCS operators between CELLO various cell stuff; exchange NCS operators between X-PLOR and O
• moleman manipulation, conversion & analysis of PDB files MOLEMAN manipulation, conversion & analysis of PDB files
• o2d 1D and 2D plots of all sorts of things O2D 1D and 2D plots of all sorts of things
• xplo2d some handy stuff for analysing XPLOR Mol. Repl. output XPLO2D some handy stuff for analysing X-PLOR Mol. Repl. output
• dcup data-collection utility program DCUP data-collection utility program
• ost produce tables for O based on sequence alignments ost produce tables for O based on sequence alignments (obsolete; use SOD instead)
• pretty clean up ASCII files by replacing multiple spaces pretty clean up ASCII files by replacing multiple spaces by only one space (usage: 4d_pretty < in > out)
• empty clean up ASCII files by removing empty lines empty clean up ASCII files by removing empty lines (usage: 4d_empty < in > out, or pipe into 4d_pretty)
• odledit link between O plot files (5.9.1) and "oplot" odledit link between O plot files (5.9.1) and "oplot"
• sod convert multiple sequences to O datablocks SOD convert multiple sequences to O datablocks
• oops the model-rebuilding accelerator OOPS the model-rebuilding accelerator
• odbman the O datablock manipulator ODBMAN the O datablock manipulator

All of these run on SGI, ESV and DEC ALPHA/OSF1 computers. Note that O2D only contains interactive graphics facilities in its SGI version.