Category: S.806 - general
Use the following (updated @ 940926):
- O 1 T.A. Jones, J.Y. Zou, S.W. Cowan & M. Kjeldgaard,
"Improved methods for building protein models in electron
density maps and the location of errors in these models",
Acta Cryst. A47, 110-119 (1991).
- O 2 T.A. Jones & M. Kjeldgaard
"O - the manual" (version x.y.z)
Uppsala (199x) pp. 1-xyz.
- FRODO T.A. Jones, "A graphics model building and refinement
system for macromolecules", J. Appl. Cryst. 11, 268-272 (1978).
- RAVE 1 T.A. Jones, "a, yaap, asap, @#*? A set of averaging programs"
in "Molecular Replacement" (E.J. Dodson et al., Eds.)
SERC Daresbury Laboratory (1992), pp. 92-105.
- RAVE 2 G.J. Kleywegt & T.A. Jones, "Halloween ... Masks and Bones",
in "From First Map to Final Model" (S. Bailey, R. Hubbard &
D. Waller, Eds.), SERC Daresbury Laboratory (1994), pp. 59-66.
- RAVE 3 G.J. Kleywegt & T.A. Jones, "Convenient single and multiple-
crystal real-space averaging of macromolecular electron-
density maps", to be published.
- VOIDOO G.J. Kleywegt & T.A. Jones, "Detection, Delineation, Measurement
and Display of Cavities in Macromolecular Structures"
Acta Cryst. D50, 178-185 (1994).
- DEJAVU G.J. Kleywegt & T.A. Jones, "Halloween ... Masks and Bones",
in "From First Map to Final Model" (S. Bailey, R. Hubbard &
D. Waller, Eds.), SERC Daresbury Laboratory (1994), pp. 59-66.
- DEJAVU G.J. Kleywegt & T.A. Jones, "Detecting Similarities in
Protein Structures", to be published (Methods in Enzymology).
- OOPS G.J. Kleywegt & T.A. Jones, "Good model-building and
refinement practice", to be published (Methods in Enzymology).
- X-UTIL G.J. Kleywegt, mostly unpublished results.
In addition, we discuss several programs at a more practical level
in an on-going series "News from the Uppsala Software Factory"
in the ESF/CCP4 Newsletter:
- G.J. Kleywegt, "Dictionaries for Heteros",
ESF/CCP4 Newsletter 31 (32?), June 1995, pp. 45-50.
(MOLEMAN, XPLO2D, OMAC/hetero.pdb))
- G.J. Kleywegt & T.A. Jones, "A super position",
ESF/CCP4 Newsletter 31, November 1994, pp. 9-14.
(LSQMAN)
- G.J. Kleywegt & T.A. Jones, "OOPS-a-daisy",
ESF/CCP4 Newsletter 30, June 1994, pp. 20-24.
(OOPS)
- G.J. Kleywegt & T.A. Jones, "Biomacromolecular Speleology",
ESF/CCP4 Newsletter 29, November 1993, pp. 26-28.
(VOIDOO)
- G.J. Kleywegt & T.A. Jones, "Masks Made Easy",
ESF/CCP4 Newsletter 28, May 1993, pp. 56-59.
(MAMA)
950824: Gerard's programs nowadays print a list of applicable
references (or the absence thereof) at startup.