Storage Servers

Access these by cd'ing to the appropriate directory (eg. cd /home2) if you're on a MSG Unix system, through AFP on OSX desktops, or through Samba on Windows desktops. Email system@msg.ucsf.edu if you need access to a particular disk.

Click on each in the list below to find out what directories and folders are found on each disk


Graphics Workstations

These are open for anyone in MSG to use. Contact system@msg.ucsf.edu to request access.

Hostname Location Specs Notes
blue S421 Dual 3.2GHz 64 bit Xeon, 2GB RAM, Nvidia 3D stereo graphics, Suse Linux
ganymede S421 Dual 3.2GHz 64 bit Xeon, 2GB RAM, Nvidia 3D stereo graphics, Suse Linux
neptune S421 Dual 3.2GHz 64 bit Xeon, 2GB RAM, Nvidia 3D stereo graphics, Suse Linux
pluto S421 2.6GHz 32 bit Xeon, 1GB RAM, Nvidia 3D stereo graphics, Suse Linux
herb S421 SGI Octane, 260 MHz R12000 CPU, 384MB RAM, Irix
venus S421 Dual 3.2GHz 64 bit Xeon, 2GB RAM, Nvidia 3D stereo graphics, Suse Linux
pop N421 SGI O2, 180MHz R5000 CPU, 192MB RAM, Irix
hivaoa N421 180MHz R5000 CPU, 384MB RAM, Irix
jerry N421 SGI Octane, 270MHz R12000 CPU, 384MB RAM, Irix
mama N421 SGI Octane, 225MHz R10000 CPU, 384MB RAM, Irix
nukuhiva N421 SGI O2, 180MHz R5000 CPU, 256MB RAM, Irix

Data Collection and Data Processing Computers

These are reserved for controlling instruments or processing data. For x-ray access, email waddling@msg.ucsf.edu. For access to the EM machines, have your PI contact system@msg.ucsf.edu.

Hostname Location Specs Notes
leg20 S101G 2.66GHz Pentium 4 CPU, 2GB RAM, Nvidia 3D graphics, Suse Linux EM Leginon system
leg30 S101G 2.8GHz Pentium 4 CPU, 2GB RAM, Nvidia 3D graphics, Suse Linux EM Leginon system
vpro S101G 3.4GHz Pentium 4 CPU, 3GB RAM, Suse Linux EM use
ec20 N106 4 dual 3.2GHz x86_64 Xeon nodes, 2GB RAM each node, ROCKS cluster OS EM online reconstructions
ec30 N106 4 dual 3.2GHz x86_64 Xeon nodes, 2GB RAM each node, ROCKS cluster OS EM online reconstructions
charybdis S176 SGI O2, 180MHz R5000 CPU, 256MB RAM, Irix X-ray data collection
raxis4 S176 3.6GHz Pentium 4 CPU, 2GB RAM, Nvidia graphics, Fedora Linux X-ray data collection
om1 Sedat lab 100MHz SGI, 128MB RAM, Irix Controls OM1 scope
romulus N106 Dual 3GHz Xeon, 1GB RAM, Suse Linux Leginon database server

Computers for Running Jobs

Log into these remotely to run computationally intensive jobs. See the Notes column to determine who has access to what.

Hostname Location Specs Notes
oc1 N106 2.8GHz Xeon, 2GB RAM, ROCKS cluster OS Sedat lab
oc2 N106 2.8GHz Xeon, 2GB RAM, ROCKS cluster OS Sedat lab
lbox1 N106 2.8GHz Pentium 4 CPU, 1 GB RAM, Fedora Linux Agard lab
lbox2 N106 2.8GHz Pentium 4 CPU, 1 GB RAM, Fedora Linux Agard lab
lbox3 N106 3.2GHz x86_64 Xeon CPU, 4GB RAM, Suse Linux Agard lab
lbox4 N106 3.2GHz x86_64 Xeon CPU, 4GB RAM, Suse Linux Agard lab
mic N106 800MHz Pentium CPU, 256MB RAM, RedHat Linux Has Portland Group compilers
ds1019 N106 600MHz EV67 Alpha, 256MB RAM, RedHat Linux X-ray users. Access through "alin256" queue.
ds1020 N106 600MHz EV67 Alpha, 256MB RAM, RedHat Linux X-ray users. Access through "alin256" queue.
ds1021 N106 600MHz EV67 Alpha, 256MB RAM, RedHat Linux X-ray users. Access through "alin256" queue.
ds1022 N106 600MHz EV67 Alpha, 256MB RAM, RedHat Linux X-ray users. Access through "alin256" queue.
ds1023 N106 600MHz EV67 Alpha, 256MB RAM, RedHat Linux X-ray users. Access through "alin256" queue.
ds1024 N106 600MHz EV67 Alpha, 256MB RAM, RedHat Linux X-ray users. Access through "alin256" queue.
ds1025 N106 600MHz EV67 Alpha, 256MB RAM, RedHat Linux X-ray users. Access through "alin256" queue.
ds1026 N106 600MHz EV67 Alpha, 256MB RAM, RedHat Linux X-ray users. Access through "alin256" queue.

Beowulf Clusters

These are reserved for specific users. Have your PI contact system@msg.ucsf.edu to request access.

Hostname Location Specs Notes
xc1 N106 9 dual 2.2GHz Xeon nodes, 2GB RAM each node, ROCKS cluster OS Agard lab cluster
ec1 N106 7 dual 2.2GHz Xeon nodes, 2GB RAM each node, ROCKS cluster OS EM cluster
ec2 N106 4 dual 3.2GHz x86_64 Xeon nodes, 2GB RAM each node, ROCKS cluster OS EM cluster
ec3 N106 9 dual 3.2GHz Xeon nodes, 2GB RAM each node, ROCKS cluster OS EM cluster
ec6 N106 9 dual 3.2GHz x86_64 Xeon nodes, 2GB RAM each node, ROCKS cluster OS EM cluster
ec20 N106 4 dual 3.2GHz x86_64 Xeon nodes, 2GB RAM each node, ROCKS cluster OS EM online reconstructions
ec30 N106 4 dual 3.2GHz x86_64 Xeon nodes, 2GB RAM each node, ROCKS cluster OS EM online reconstructions
sc1 N106 17 dual 3.0GHz Xeon nodes, 2GB RAM each node, ROCKS cluster OS Stroud lab cluster

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