Protein, DNA and Diffraction Databases

• Anomolous Scattering Factors and Absorption Coefficients Local copy of Sasaki's tables
• Atlas of Side-Chain and Main-Chain Hydrogen Bonding A record of the hydrogen bonding patterns of the standard hydrogen bonding groups
• Biology Workbench Point and click web interface that provides access to databases and analysis tools
• CATH Protein Structure Classification
• CE (Combinatorial Extension) Aligns two polypeptide chains using characteristics of their local geometry
• Cis-Prolines, Cis-Peptides and Disulfides Lists thereof
• DALI Server Comparing protein structures in 3D
• DSSP Program and Database Secondary Structure Assignments
• Entrez Protein, Nucleotide Databases and MEDLINE subset
• FSSP Fold classification based on Structure-Structure alignment of Proteins
• Macromolecular Assemblies Protein Quaternary Structure Database (from the EBI-MSD)
• HIC-Up Hetero-Compounds - Uppsala (PDB, VRML files; X-PLOR, TNT, O Dictionaries)
• National Library of Medicine PubMed and other Online Information Services
• NCBI National Center for Biotechnology Information (GenBank, BLAST, Entrez, etc.)
• Nucleic Acid Database (NBD) Repository for the coordinates of nucleic acid-containing crystal structure (Rutgers Univ.)
• WWW OWL Composite Protein Sequence Database
• Protein Data Bank (PDB) X-ray, NMR and Model Structures (Now the RCSB)
• Protein-Protein Interfaces All interfaces with >9 residues interacting. (JMB paper describing this database)
• PubMed Citation Searching
• Research Collaboratory for Structural Bioinformatics (RCSB) X-ray, NMR and Model Structures (Now the PDB)
• SgInfo A comprehensive Collection of ANSI C Routines for the Handling of Space Group Symmetry
• Structural Classification of Proteins (SCOP) Families, Superfamilies and Folds
• SWISS-PROT Highly Annotated Protein Sequence Databases
• VAST NCBI's structure-structure similarity search

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