From: SMTP%"email@example.com" 23-OCT-1995 09:31:21.52
I've just finish to refine my structure, an aspartyl tRNA synthetase complex. I must now analyse it by comparing it with the other structures known. As the synthetase are made of modules, we are comparing the displacement of modules from the differnt complexes. We then superpose the complexes on their active site and look at the differences occuring elsewhere in the structure, using RMsd in LSQMAN. BUT, it would be great if Rmsd can give the same information as SHow_ope , i.e. the rotation , ... between the partners. For the moment , I take the matrix and paste it to an other program to have the rotation information.
Would it be possible to add more informations (like SHow_op) in RMsd ? Thanks a lot !!
From: XRAY::GERARD "Gerard 'CD' Kleywegt" 23-OCT-1995 16:30:02.69
rmsd uses the operator that you have determined with either the EXplicit or the IMprove option so if you do, for example, EX m1 aaa m2 aaa then RMsd ..., the SHow command does show you the operator that the RMsd command has used.