Protein Structure Predictions

Significance of structural changes in proteins: Expected errors in refined protein structures.
Stroud, RM; Fauman, EB. (1995).
Protein Science 4, 2392-2404.
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Protein structure prediction with a combined solvation free energy-molecular mechanics force field.
Schiffer, CA; Caldwell, JW; Kollman, PA; Stroud, RM. (1993)
Molecular Simulation 10, 121-149.
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Inclusion of solvation free energy with molecular mechanics energy: alanyl dipeptide as a test case.
Schiffer, CA; Caldwell, JW; Stroud, RM; Kollman, PA. (1992)
Protein Science 1, 396-400.
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Epidermal growth factor (EGF) induces oligomerization of soluble, extracellular, ligand-binding domain of EGF receptor. A low resolution projection structure of the ligand-binding domain.
Lax, I; Mitra, AK; Ravera, C; Hurwitz, DR; Rubinstein, M; Ullrich, A; Stroud, RM; Schlessinger, J.  (1991) 
Journal of Biological Chemistry 266, 13828-13833.
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Prediction of homologous protein structures based on conformational searches and energetics.
Schiffer, CA; Caldwell, JW; Kollman, PA; Stroud, RM. (1990) 
Proteins 8, 30-43.
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Identification of membrane proteins and soluble protein secondary structural elements, domain structure, and packing arrangements by Fourier-transform amphipathic analysis.
Finer-Moore, J; Bazan, JF; Rubin, J; Stroud, RM. (1989)
Prediction of Protein Structure and the Principles of Protein Conformation
G Fasman, ed., Plenum Press, New York, pp 719-759.
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A new strategy for mapping the topography of a transmembrane protein using mass spectometry.
Falick, AM; Mel, SF; Stroud, RM; Burlingame, AL. (1988)
Techniques in Protein Chemistry, Academic Press, pp 152-159.
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Structural and functional conservation between yeast and human 3-hydroxy-3-methylglutaryl coenzyme A reductases, the rate-limiting enzyme of sterol biosynthesis.
Basson, ME; Thorsness, M; Finer-Moore, J; Stroud, RM; Kuntz, ID. (1988)
Molecular and Cellular Biology 8, 3797-3808.
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Independent mutations at the amino terminus of a protein act as surrogate signals for mitochondrial import.
Vassarotti, A; Stroud, RM; Douglas, M. (1987)
EMBO Journal 6, 705-711.
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Family of G protein α chains: amphipathic analysis and predicted structure of functional domains.
Masters, SB; Stroud, RM; Bourne, HR. (1986)
Protein Engineering 1, 47-54.
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Domain structure of 3-Hydroxy-3-methylglutaryl coenzyme A reductase, a glycoprotein of the endoplasmic reticulum.
Liscum, L; Finer-Moore, J; Stroud, RM; Luskey, KL; Brown, MS; Goldstein, JL. (1985) 
Journal of  Biological Chemistry 260, 522-530.
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Subunit secondary structure in filamentous viruses: Predictions and observations.
Finer-Moore, J; Stroud, RM; Prescott, B; Thomas, GJ, Jr. (1984) 
Journal of Biomolecular Structure and Dynamics 2, 93-100. 
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Structure-function studies on human alpha interferon.
Wetzel, R; Levine, HL; Estell, DA; Shire, S; Finer-Moore, J;Stroud, RM; Bewley, TA. (1982) 
Interferons
Academic Press, New York, NY, pp 365-376.